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AT1G06680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II subunit P-1
Curator
Summary (TAIR10)
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational
Description (TAIR10)
photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 287 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:22419DNASU:837178eggNOG:ENOG410IFSVeggNOG:ENOG4110ARYEMBL:AC007592EMBL:AY056416EMBL:AY070469
EMBL:AY074308EMBL:AY087305EMBL:AY096487EMBL:CP002684EMBL:X98108EMBL:Z25620EnsemblPlants:AT1G06680
EnsemblPlants:AT1G06680.1entrez:837178ExpressionAtlas:Q42029Gene3D:3.40.1000.10GeneID:837178Genevisible:Q42029GO:GO:0005509
GO:GO:0008266GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009543GO:GO:0009570GO:GO:0009579
GO:GO:0009654GO:GO:0009941GO:GO:0019684GO:GO:0019898GO:GO:0031977GO:GO:0042742GO:GO:0048046
hmmpanther:PTHR31407hmmpanther:PTHR31407:SF6HOGENOM:HOG000242124InParanoid:Q42029IntAct:Q42029InterPro:IPR002683InterPro:IPR016123
iPTMnet:Q42029KEGG:ath:AT1G06680KO:K02717OMA:SNLSVMIPaxDb:Q42029Pfam:PF01789Pfam:Q42029
PhylomeDB:Q42029PIR:JC5271PRIDE:Q42029PRO:PR:Q42029ProteinModelPortal:Q42029Proteomes:UP000006548RefSeq:NP_001117239.1
RefSeq:NP_172153.1SMR:Q42029STRING:3702.AT1G06680.1SUPFAM:SSF55724SWISS-2DPAGE:Q42029TAIR:AT1G06680tair10-symbols:OE23
tair10-symbols:OEE2tair10-symbols:PSBP-1tair10-symbols:PSII-PUniGene:At.23738UniGene:At.3352UniGene:At.42209UniGene:At.47605
UniProt:Q42029
Coordinates (TAIR10) chr1:+:2047940..2049186
Molecular Weight (calculated) 28096.60 Da
IEP (calculated) 7.49
GRAVY (calculated) -0.34
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYSACFLHQ SALASSAARS SSSSSSQRHV SLSKPVQIIC KAQQSHEDDN SAVSRRLALT LLVGAAAVGS KVSPADAAYG EAANVFGKPK TNTDFLPYNG
101: DGFKVQVPAK WNPSKEIEYP GQVLRFEDNF DATSNLNVMV TPTDKKSITD YGSPEEFLSQ VNYLLGKQAY FGETASEGGF DNNAVATANI LESSSQEVGG
201: KPYYYLSVLT RTADGDEGGK HQLITATVNG GKLYICKAQA GDKRWFKGAR KFVESAATSF SVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)