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AT1G06430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FTSH protease 8
Curator
Summary (TAIR10)
encodes a FtsH protease that is localized to the chloroplast
Computational
Description (TAIR10)
FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink).
Protein Annotations
BRENDA:3.4.24.B20EC:3.4.24.-eggNOG:COG0465eggNOG:KOG0731EMBL:AC007592EMBL:AF419565EMBL:AY045951
EMBL:BT002649EMBL:BT003813EMBL:CP002684EnsemblPlants:AT1G06430EnsemblPlants:AT1G06430.1entrez:837154Gene3D:3.40.50.300
GeneID:837154Genevisible:Q8W585GO:GO:0004176GO:GO:0004222GO:GO:0005524GO:GO:0006508GO:GO:0007275
GO:GO:0008237GO:GO:0008270GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009941
GO:GO:0010027GO:GO:0010205GO:GO:0010206GO:GO:0010304GO:GO:0016020GO:GO:0016021Gramene:AT1G06430.1
HAMAP:MF_01458hmmpanther:PTHR23076hmmpanther:PTHR23076:SF60HOGENOM:HOG000217276InParanoid:Q8W585InterPro:IPR000642InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR005936InterPro:IPR011546InterPro:IPR027417iPTMnet:Q8W585KEGG:ath:AT1G06430
KO:K03798MEROPS:M41.025OMA:IAGMEGRPaxDb:Q8W585Pfam:PF00004Pfam:PF01434Pfam:PF06480
Pfam:Q8W585PhylomeDB:Q8W585PRIDE:Q8W585PRO:PR:Q8W585PROSITE:PS00674ProteinModelPortal:Q8W585Proteomes:UP000006548
RefSeq:NP_563766.3scanprosite:PS00674SMART:SM00382SMR:Q8W585STRING:3702.AT1G06430.1SUPFAM:SSF140990SUPFAM:SSF52540
TAIR:AT1G06430tair10-symbols:FTSH8TIGRfam:TIGR01241TIGRFAMs:TIGR01241UniGene:At.17054UniProt:Q8W585
Coordinates (TAIR10) chr1:-:1960214..1962525
Molecular Weight (calculated) 73202.90 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.13
Length 685 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSACLLG NGLSVYTTKQ RFQKLGLDRT SKVTVVKASL DEKKHEGRRG FFKLLLGNAA AGVGLLASGN ANADEQGQGV SSSRMSYSRF LEYLDKGRVE
101: KVDLYENGTI AIVEAVSPEL GNRIQRVRVQ LPGLSQELLQ KLRAKNIDFA AHNAQEDQGS PILNLIGNLA FPVILIGGLF LLSRRSSGGM GGPGGPGFPL
201: QIGQSKAKFQ MEPNTGVTFD DVAGVDEAKQ DFMEVVEFLK KPERFTAVGA RIPKGVLLVG PPGTGKTLLA KAIAGEAGVP FFSISGSEFV EMFVGVGASR
301: VRDLFKKAKE NAPCIVFVDE IDAVGRQRGT GIGGGNDERE QTLNQLLTEM DGFEGNTGVI VVAATNRADI LDSALLRPGR FDRQVSVDVP DVKGRTDILK
401: VHSGNKKFES GVSLEVIAMR TPGFSGADLA NLLNEAAILA GRRGKTAISS KEIDDSIDRI VAGMEGTVMT DGKSKSLVAY HEVGHAICGT LTPGHDAVQK
501: VTLIPRGQAR GLTWFIPSDD PTLISKQQLF ARIVGGLGGR AAEEVIFGES EVTTGAVSDL QQITGLAKQM VTTFGMSEIG PWSLMDSSEQ SDVIMRMMAR
601: NSMSEKLAND IDTAVKTLSD KAYEIALSQI RNNREAMDKI VEILLEKETM SGDEFRAILS EFTEIPPENR VASSTSTSTP TPASV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)