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AT1G05190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L6 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
Protein Annotations
BioGrid:24508eggNOG:COG0097eggNOG:KOG3254EMBL:AC000098EMBL:AF360265EMBL:AY040077EMBL:AY085715
EMBL:CP002684EnsemblPlants:AT1G05190EnsemblPlants:AT1G05190.1entrez:839273EvolutionaryTrace:O23049Gene3D:3.90.930.12GeneID:839273
Genevisible:O23049GO:GO:0003723GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009570
GO:GO:0009735GO:GO:0009941GO:GO:0016020GO:GO:0019843Gramene:AT1G05190.1HAMAP:MF_01365_Bhmmpanther:PTHR11655
hmmpanther:PTHR11655:SF14HOGENOM:HOG000039903InParanoid:O23049IntAct:O23049InterPro:IPR000702InterPro:IPR002358InterPro:IPR019906
InterPro:IPR020040KEGG:ath:AT1G05190KO:K02933OMA:LIANMVEPANTHER:PTHR11655PaxDb:O23049Pfam:O23049
Pfam:PF00347PhylomeDB:O23049PIR:C86186PRIDE:O23049PRINTS:PR00059PRO:PR:O23049PROSITE:PS00525
ProteinModelPortal:O23049Proteomes:UP000006548RefSeq:NP_172011.1scanprosite:PS00525SMR:O23049STRING:3702.AT1G05190.1SUPFAM:SSF56053
TAIR:AT1G05190tair10-symbols:emb2394TIGRfam:TIGR03654TIGRFAMs:TIGR03654UniGene:At.24632UniGene:At.68070UniProt:O23049
Coordinates (TAIR10) chr1:-:1502515..1503738
Molecular Weight (calculated) 24707.00 Da
IEP (calculated) 10.55
GRAVY (calculated) -0.44
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSLVSSFQ PRSAFLGDRN VFKVSSTPFA QVGYSSKTIE CKESRIGKQP IAVPSNVTIA LEGQDLKVKG PLGELALTYP REVELTKEES GFLRVKKTVE
101: TRRANQMHGL FRTLTDNMVV GVSKGFEKKL ILVGVGYRAT VDGKELVLNL GFSHPVKMQI PDSLKVKVEE NTRITVSGYD KSEIGQFAAT VRKWRPPEPY
201: KGKGVKYSDE IVRRKEGKAG KKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)