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AT1G04820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tubulin alpha-4 chain
Curator
Summary (TAIR10)
Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.
Computational
Description (TAIR10)
tubulin alpha-4 chain (TUA4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process, cellular response to gravity; LOCATED IN: tubulin complex, cytosol, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-2 chain (TAIR:AT1G50010.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
Protein Annotations
BioGrid:24640BioGrid:26650eggNOG:COG5023eggNOG:KOG1376EMBL:AC015445EMBL:AF410330EMBL:AK317278
EMBL:AY065117EMBL:AY149922EMBL:CP002684EMBL:M84696EnsemblPlants:AT1G04820EnsemblPlants:AT1G04820.1EnsemblPlants:AT1G50010.1
entrez:839405entrez:841425ExpressionAtlas:B9DGT7Gene3D:1.10.287.600Gene3D:3.30.1330.20Gene3D:3.40.50.1440GeneID:839405
GeneID:841425Genevisible:B9DGT7GO:GO:0003924GO:GO:0005200GO:GO:0005525GO:GO:0005737GO:GO:0005874
GO:GO:0007017Gramene:AT1G04820.1Gramene:AT1G50010.1hmmpanther:PTHR11588hmmpanther:PTHR11588:SF101InParanoid:B9DGT7InterPro:IPR000217
InterPro:IPR002452InterPro:IPR003008InterPro:IPR008280InterPro:IPR017975InterPro:IPR018316InterPro:IPR023123iPTMnet:B9DGT7
KEGG:ath:AT1G04820KEGG:ath:AT1G50010KO:K07374ncoils:CoilPANTHER:PTHR11588PaxDb:B9DGT7Pfam:B9DGT7
Pfam:PF00091Pfam:PF03953Pfam:Q0WV25PhylomeDB:B9DGT7PIR:JQ1594PRIDE:B9DGT7PRINTS:PR01161
PRINTS:PR01162PRO:PR:B9DGT7PROSITE:PS00227ProteinModelPortal:B9DGT7Proteomes:UP000006548RefSeq:NP_171974.1RefSeq:NP_175423.1
scanprosite:PS00227SMART:SM00864SMART:SM00865SMR:B9DGT7STRING:3702.AT1G50010.1SUPFAM:SSF52490SUPFAM:SSF55307
TAIR:AT1G50010tair10-symbols:TOR2tair10-symbols:TUA4UniGene:At.22261UniGene:At.22368UniGene:At.47482UniGene:At.48153
UniGene:At.67026UniGene:At.71023UniProt:B9DGT7UniProt:Q0WV25
Coordinates (TAIR10) chr1:-:1356421..1358266
Molecular Weight (calculated) 49543.60 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.19
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)