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AT1G04620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 499 Blast hits to 498 proteins in 165 species: Archae - 202; Bacteria - 188; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G04620-MONOMERBioCyc:MetaCyc:AT1G04620-MONOMERBioGrid:24707EC:1.17.7.2eggNOG:COG1035eggNOG:ENOG410IGX7EMBL:AC002376
EMBL:AK117982EMBL:BT002029EMBL:BT006603EMBL:CP002684EnsemblPlants:AT1G04620EnsemblPlants:AT1G04620.1entrez:839472
GeneID:839472Genevisible:Q8GS60GO:GO:0009507GO:GO:0015994GO:GO:0033354GO:GO:0046872GO:GO:0051536
GO:GO:0090415Gramene:AT1G04620.1hmmpanther:PTHR31332hmmpanther:PTHR31332:SF0HOGENOM:HOG000148137InParanoid:Q8GS60IntAct:Q8GS60
InterPro:IPR007516InterPro:IPR007525KEGG:ath:AT1G04620KO:K18010OMA:YVLGTPCPaxDb:Q8GS60Pfam:PF04422
Pfam:PF04432Pfam:Q8GS60PhylomeDB:Q8GS60PIR:H86178PRIDE:Q8GS60PRO:PR:Q8GS60ProteinModelPortal:Q8GS60
Proteomes:UP000006548RefSeq:NP_171956.2SMR:Q8GS60STRING:3702.AT1G04620.1TAIR:AT1G04620UniGene:At.42441UniProt:Q8GS60
Coordinates (TAIR10) chr1:-:1282869..1286492
Molecular Weight (calculated) 51664.40 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.29
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MITVVTSRLS LLPPVFSVVN SSSSRSKDMN LEPKKKVKLR EDWREKSRPI PPGGTYPAKD HCSQCGLCDT YYIAHVKEAC AFLGDGMSRI ESLEPVVHGR
101: GRKADSLQDT YFGVHQEQLY ARKLKPVEGA QWTGIVTTIA IEMLKSNMVE AVVCVQSDPE DRLSPRPVLA RTPEEVLAAR GVKPTLSPNL NTLELIEASG
201: VKRLLFCGVG CQVQALRSVE QHLNLEKLYV LGTNCVDNGT RDGLDKFLKA ASKEPETVLH YEFMQDYKVQ LKHLDGHIEE VPYFSLPAND LVDVIAPSCY
301: SCFDYTNALA DLVIGYMGVP KYSGLNMTDH PQYITVRNER GKEMLSLVEN LLEITPTISS GDRRPFVTET VKADDAAKFG QGPAQPAPLF VGNIIAFILN
401: LVGPKGLEFA RYSLDYHTIR NYLYVNRKWG KQRANTHMPS YAKKIVEMYN KNGQIDKMLS KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)