suba logo
AT1G04410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 0.540
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16207701 (2006): plastid
  • PMID:15574830 (2004): plasma membrane
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Lactate/malate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink).
Protein Annotations
BioGrid:24762EC:1.1.1.37eggNOG:COG0039eggNOG:KOG1496EMBL:AC000104EMBL:AY050374EMBL:AY065134
EMBL:AY081563EMBL:AY088023EMBL:AY133655EMBL:CP002684EnsemblPlants:AT1G04410EnsemblPlants:AT1G04410.1entrez:839527
Gene3D:3.40.50.720Gene3D:3.90.110.10GeneID:839527Genevisible:P93819GO:GO:0005634GO:GO:0005773GO:GO:0005774
GO:GO:0005886GO:GO:0005975GO:GO:0006099GO:GO:0006108GO:GO:0009506GO:GO:0009507GO:GO:0009570
GO:GO:0009651GO:GO:0009735GO:GO:0010043GO:GO:0016020GO:GO:0030060GO:GO:0046686GO:GO:0048046
Gramene:AT1G04410.1gramene_pathway:1.1.1.37gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690gramene_pathway:PWYQT-4481HOGENOM:HOG000220953InParanoid:P93819
IntAct:P93819InterPro:IPR001236InterPro:IPR001252InterPro:IPR001557InterPro:IPR010945InterPro:IPR011274InterPro:IPR015955
InterPro:IPR016040InterPro:IPR022383iPTMnet:P93819KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37
KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37KEGG:00720+1.1.1.37KEGG:ath:AT1G04410KO:K00025OMA:YAPSIPRPaxDb:P93819
Pfam:P93819Pfam:PF00056Pfam:PF02866PhylomeDB:P93819PIR:B86176PIRSF:PIRSF000102PRIDE:P93819
PRO:PR:P93819PROSITE:PS00068ProteinModelPortal:P93819Proteomes:UP000006548Reactome:R-ATH-70263RefSeq:NP_171936.1scanprosite:PS00068
SMR:P93819STRING:3702.AT1G04410.1SUPFAM:SSF51735SUPFAM:SSF56327SWISS-2DPAGE:P93819TAIR:AT1G04410TIGRfam:TIGR01758
TIGRfam:TIGR01759TIGRFAMs:TIGR01758TIGRFAMs:TIGR01759UniGene:At.11041UniGene:At.47261UniProt:P93819
Coordinates (TAIR10) chr1:-:1189418..1191267
Molecular Weight (calculated) 35573.00 Da
IEP (calculated) 6.51
GRAVY (calculated) 0.01
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEPVRVLV TGAAGQIGYA LVPMIARGIM LGADQPVILH MLDIPPAAEA LNGVKMELID AAFPLLKGVV ATTDAVEGCT GVNVAVMVGG FPRKEGMERK
101: DVMSKNVSIY KSQAAALEKH AAPNCKVLVV ANPANTNALI LKEFAPSIPE KNISCLTRLD HNRALGQISE RLSVPVSDVK NVIIWGNHSS SQYPDVNHAK
201: VQTSSGEKPV RELVKDDAWL DGEFISTVQQ RGAAIIKARK LSSALSAASS ACDHIRDWVL GTPEGTFVSM GVYSDGSYSV PSGLIYSFPV TCRNGDWSIV
301: QGLPIDEVSR KKMDLTAEEL KEEKDLAYSC LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)