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AT1G04270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytosolic ribosomal protein S15
Curator
Summary (TAIR10)
Encodes cytosolic ribosomal protein S15.
Computational
Description (TAIR10)
cytosolic ribosomal protein S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19 conserved site (InterPro:IPR020934); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09510.1); Has 8033 Blast hits to 8033 proteins in 2978 species: Archae - 257; Bacteria - 3802; Metazoa - 279; Fungi - 238; Plants - 1557; Viruses - 0; Other Eukaryotes - 1900 (source: NCBI BLink).
Protein Annotations
BioGrid:24799eggNOG:COG0185eggNOG:KOG0898EMBL:AC000104EMBL:AY048221EMBL:AY091703EMBL:CP002684
EMBL:X91962EMBL:Z17791EMBL:Z23161EMBL:Z23162EnsemblPlants:AT1G04270EnsemblPlants:AT1G04270.1entrez:839564
ExpressionAtlas:Q08112Gene3D:3.30.860.10GeneID:839564Genevisible:Q08112GO:GO:0003723GO:GO:0003735GO:GO:0005774
GO:GO:0005829GO:GO:0005886GO:GO:0006412GO:GO:0009506GO:GO:0022626GO:GO:0022627HAMAP:MF_00531
hmmpanther:PTHR11880hmmpanther:PTHR11880:SF10HOGENOM:HOG000111561InParanoid:Q08112IntAct:Q08112InterPro:IPR002222InterPro:IPR005713
InterPro:IPR020934InterPro:IPR023575OMA:NIRTHARPANTHER:PTHR11880PaxDb:Q08112Pfam:PF00203Pfam:Q08112
PhylomeDB:Q08112PIR:S43412PIR:S71259PIRSF:PIRSF002144PRIDE:Q08112PRINTS:PR00975PRO:PR:Q08112
PROSITE:PS00323ProteinModelPortal:Q08112Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_171923.1scanprosite:PS00323SMR:Q08112
STRING:3702.AT1G04270.1SUPFAM:SSF54570TAIR:AT1G04270tair10-symbols:RPS15TIGRfam:TIGR01025TIGRFAMs:TIGR01025UniGene:At.23118
UniProt:Q08112
Coordinates (TAIR10) chr1:-:1141852..1142960
Molecular Weight (calculated) 17130.30 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.35
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVEPEVAA AGVPKKRTFK KFAFKGVDLD ALLDMSTDDL VKLFSSRIRR RFSRGLTRKP MALIKKLRKA KREAPQGEKP EPVRTHLRNM IIVPEMIGSI
101: IGVYNGKTFN QVEIKPEMIG HYLAEFSISY KPVKHGRPGV GATHSSRFIP LK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)