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AT1G03910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink).
Protein Annotations
BioGrid:24606eggNOG:ENOG410XPKFeggNOG:KOG2370EMBL:AC003027
EMBL:CP002684EnsemblPlants:AT1G03910EnsemblPlants:AT1G03910.1EnsemblPlants:AT1G03910.2
entrez:839371ExpressionAtlas:F4I2J8GeneID:839371Genevisible:F4I2J8
GO:GO:0005681GO:GO:0006397GO:GO:0008380GO:GO:0016607
hmmpanther:PTHR21737hmmpanther:PTHR21737:SF4HOGENOM:HOG000184070InParanoid:F4I2J8
IntAct:F4I2J8InterPro:IPR018816InterPro:IPR019134iPTMnet:F4I2J8
KEGG:ath:AT1G03910MINT:MINT-8414393ncoils:CoilOMA:AEQTESH
PaxDb:F4I2J8Pfam:PF09732Pfam:PF10312PIR:H86169
PRIDE:F4I2J8PRO:PR:F4I2J8ProteinModelPortal:F4I2J8Proteomes:UP000006548
RefSeq:NP_001184904.1RefSeq:NP_171887.1STRING:3702.AT1G03910.2TAIR:AT1G03910
UniGene:At.51474UniProt:Q9ZWB1
Coordinates (TAIR10) chr1:+:996432..1000231
Molecular Weight (calculated) 78289.80 Da
IEP (calculated) 6.57
GRAVY (calculated) -1.08
Length 672 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSHGKGKRD RSGRQKKRRD ESESGSESES YTSDSDGSDD LSPPRSSRRK KGSSSRRTRR RSSSDDSSDS DGGRKSKKRS SSKDYSEEKV TEYMSKKAQK
101: KALRAAKKLK TQSVSGYSND SNPFGDSNLT ETFVWRKKIE KDVHRGVPLE EFSVKAEKRR HRERMTEVEK VKKRREERAV EKARHEEEMA LLARERARAE
201: FHDWEKKEEE FHFDQSKVRS EIRLREGRLK PIDVLCKHLD GSDDLDIELS EPYMVFKGLT VKDMEELRDD IKMYLDLDRA TPTRVQYWEA LIVVCDWELA
301: EARKRDALDR ARVRGEEPPA ELLAQERGLH AGVEADVRKL LDGKTHAELV ELQLDIESQL RSGSAKVVEY WEAVLKRLEI YKAKACLKEI HAEMLRRHLH
401: RLEQLSEGED DVEVNPGLTR VVEENEEEIN DTNLSDAEEA FSPEPVAEEE EADEAAEAAG SFSPELMHGD DREEAIDPEE DKKLLQMKRM IVLEKQKKRL
501: KEAMDSKPAP VEDNLELKAM KAMGAMEEGD AIFGSNAEVN LDSEVYWWHD KYRPRKPKYF NRVHTGYEWN KYNQTHYDHD NPPPKIVQGY KFNIFYPDLV
601: DKIKAPIYTI EKDGTSAETC MIRFHAGPPY EDIAFRIVNK EWEYSHKKGF KCTFERGILH LYFNFKRHRY RR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)