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AT1G03630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19676087 (2009): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : protochlorophyllide oxidoreductase C
Curator
Summary (TAIR10)
Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.
Computational
Description (TAIR10)
protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Light-dependent protochlorophyllide reductase (InterPro:IPR005979), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 21168 Blast hits to 21148 proteins in 2215 species: Archae - 200; Bacteria - 11840; Metazoa - 1905; Fungi - 1885; Plants - 1089; Viruses - 0; Other Eukaryotes - 4249 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G03630-MONOMERBioCyc:ARA:GQT-1039-MONOMERBioCyc:MetaCyc:AT1G03630-MONOMERBioGrid:24247BRENDA:1.3.1.33EC:1.3.1.33eggNOG:COG1028
eggNOG:KOG1208EMBL:AB035746EMBL:AC002560EMBL:AY048263EMBL:AY088529EMBL:AY133569EMBL:CP002684
EnsemblPlants:AT1G03630EnsemblPlants:AT1G03630.1entrez:839009ExpressionAtlas:O48741Gene3D:3.40.50.720GeneID:839009Genevisible:O48741
GO:GO:0003959GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009941GO:GO:0015979GO:GO:0015995
GO:GO:0016630GO:GO:0031969gramene_pathway:1.3.1.33gramene_pathway:CHLOROPHYLL-SYNInParanoid:O48741IntAct:O48741InterPro:IPR002347
InterPro:IPR005979InterPro:IPR016040KEGG:00860+1.3.1.33MINT:MINT-8058859OMA:FRRTEQPPaxDb:O48741Pfam:O48741
Pfam:PF00106PhylomeDB:O48741PIR:T00897PRIDE:O48741PRINTS:PR00081PRO:PR:O48741ProteinModelPortal:O48741
Proteomes:UP000006548RefSeq:NP_171860.1SMR:O48741STRING:3702.AT1G03630.1SUPFAM:SSF51735TAIR:AT1G03630tair10-symbols:POR C
tair10-symbols:PORCTIGRfam:TIGR01289TIGRFAMs:TIGR01289UniGene:At.24740UniPathway:UPA00668UniProt:O48741UniProt:Q0WVW0
Coordinates (TAIR10) chr1:+:907699..909245
Molecular Weight (calculated) 43885.40 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.35
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)