suba logo
AT1G03600.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem II family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PSB27; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II repair; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast photosystem II, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 273 Blast hits to 273 proteins in 82 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Protein Annotations
BioGrid:24684eggNOG:ENOG410IXZQeggNOG:ENOG4111SBPEMBL:AC002560EMBL:AF324690EMBL:AF370539EMBL:AY044332
EMBL:AY084551EMBL:AY114570EMBL:CP002684EnsemblPlants:AT1G03600EnsemblPlants:AT1G03600.1entrez:839449GeneID:839449
Genevisible:Q9LR64GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0010206GO:GO:0010207
Gramene:AT1G03600.1HAMAP:MF_01481hmmpanther:PTHR34041hmmpanther:PTHR34041:SF1HOGENOM:HOG000012510InParanoid:Q9LR64IntAct:Q9LR64
InterPro:IPR025585KEGG:ath:AT1G03600KO:K08902ncoils:CoilOMA:REASNYWPaxDb:Q9LR64Pfam:PF13326
Pfam:Q9LR64PhylomeDB:Q9LR64PIR:T00900PRIDE:Q9LR64PRO:PR:Q9LR64ProteinModelPortal:Q9LR64Proteomes:UP000006548
RefSeq:NP_563687.1SMR:Q9LR64STRING:3702.AT1G03600.1TAIR:AT1G03600tair10-symbols:PSB27UniGene:At.15585UniGene:At.74159
UniProt:Q9LR64
Coordinates (TAIR10) chr1:+:898916..899440
Molecular Weight (calculated) 18835.70 Da
IEP (calculated) 10.50
GRAVY (calculated) -0.25
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)