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AT1G03475.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Coproporphyrinogen III oxidase
Curator
Summary (TAIR10)
Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
Computational
Description (TAIR10)
LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G03475-MONOMERBioCyc:MetaCyc:AT1G03475-MONOMERBioGrid:24724BRENDA:1.3.3.3EC:1.3.3.3eggNOG:COG0408eggNOG:KOG1518
EMBL:AB044394EMBL:AC002560EMBL:AF375424EMBL:AJ420796EMBL:AY113166EMBL:CP002684EnsemblPlants:AT1G03475
EnsemblPlants:AT1G03475.1entrez:839489Gene3D:3.40.1500.10GeneID:839489Genevisible:Q9LR75GO:GO:0004109GO:GO:0006782
GO:GO:0009507GO:GO:0009570GO:GO:0009735GO:GO:0015995GO:GO:0042803GO:GO:0048046Gramene:AT1G03475.1
gramene_pathway:1.3.3.3gramene_pathway:CHLOROPHYLL-SYNgramene_pathway:HEME-BIOSYNTHESIS-IIhmmpanther:PTHR10755hmmpanther:PTHR10755:SF7HOGENOM:HOG000262768InParanoid:Q9LR75
InterPro:IPR001260InterPro:IPR018375KEGG:00860+1.3.3.3KEGG:ath:AT1G03475KO:K00228OMA:QRPEAKGPANTHER:PTHR10755
PaxDb:Q9LR75Pfam:PF01218Pfam:Q9LR75PhylomeDB:Q9LR75PIR:C86166PIRSF:PIRSF000166PRIDE:Q9LR75
PRINTS:PR00073PRO:PR:Q9LR75PROSITE:PS01021ProteinModelPortal:Q9LR75Proteomes:UP000006548Reactome:R-ATH-189451RefSeq:NP_171847.4
scanprosite:PS01021SMR:Q9LR75STRING:3702.AT1G03475.1SUPFAM:SSF102886TAIR:AT1G03475tair10-symbols:ATCPO-Itair10-symbols:HEMF1
tair10-symbols:LIN2UniGene:At.19140UniPathway:UPA00251UniPathway:UPA00668UniProt:Q9LR75
Coordinates (TAIR10) chr1:-:869302..871175
Molecular Weight (calculated) 43798.40 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.54
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MASHSSTLLS SPTFAPFSSH RLHYSPNPST LRFSRPIRNK PNLALRCSVS IEKEVPETER PFTFLRDSDD VTPSSSSSSV RARFETMIRA AQDSVCDAIE
101: AIEGGPKFKE DVWSRPGGGG GISRVLQDGN VFEKAGVNVS VVYGVMPPEA YRAAKGSASD QKPGPVPFFA AGVSSVLHPK NPFAPTLHFN YRYFETDAPK
201: DVPGAPRQWW FGGGTDFTPA YIFEEDVKHF HSIQKQACDK FDPSFYPRFK KWCDDYFYIK HRDERRGLGG IFFDDLNDYD QEMLLSFATE CANSVVPAYI
301: PIVEKRKDME FTEQHKAWQQ LRRGRYVEFN LVYDRGTTFG LKTGGRIESI LVSLPLSARW EYDHKPEEGT EEWKLLDACI NPKEWI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)