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AT1G03130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25641898 (2015): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem I subunit D-2
Curator
Summary (TAIR10)
Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2)
Computational
Description (TAIR10)
photosystem I subunit D-2 (PSAD-2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: photosystem I subunit D-1 (TAIR:AT4G02770.1); Has 509 Blast hits to 509 proteins in 136 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 3; Other Eukaryotes - 198 (source: NCBI BLink).
Protein Annotations
BioGrid:23639eggNOG:ENOG410IHD6eggNOG:ENOG4111HAVEMBL:AC006550EMBL:AF324708EMBL:AF332413EMBL:AJ245907
EMBL:AY039565EMBL:AY086772EMBL:BT000856EMBL:CP002684EnsemblPlants:AT1G03130EnsemblPlants:AT1G03130.1entrez:838400
Gene3D:3.30.1470.10GeneID:838400Genevisible:Q9SA56GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009538
GO:GO:0009579GO:GO:0009941GO:GO:0015979GO:GO:0016020Gramene:AT1G03130.1gramene_pathway:PWY-101hmmpanther:PTHR31982
hmmpanther:PTHR31982:SF4HOGENOM:HOG000111347InParanoid:Q9SA56IntAct:Q9SA56InterPro:IPR003685iPTMnet:Q9SA56KEGG:ath:AT1G03130
KO:K02692OMA:TRTMRINPaxDb:Q9SA56Pfam:PF02531Pfam:Q9SA56PhylomeDB:Q9SA56PIR:D86162
PRIDE:Q9SA56PRO:PR:Q9SA56ProteinModelPortal:Q9SA56Proteomes:UP000006548RefSeq:NP_171812.1SMR:Q9SA56STRING:3702.AT1G03130.1
SUPFAM:0039454SUPFAM:SSF64234TAIR:AT1G03130tair10-symbols:PSAD-2TCDB:5.B.4.1.1UniGene:At.22672UniGene:At.24706
UniProt:Q9SA56
Coordinates (TAIR10) chr1:-:753528..754142
Molecular Weight (calculated) 22307.80 Da
IEP (calculated) 10.35
GRAVY (calculated) -0.39
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)