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AT1G02560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
  • PMID:11278690 (2001): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear encoded CLP protease 5
Curator
Summary (TAIR10)
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational
Description (TAIR10)
nuclear encoded CLP protease 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2; Bacteria - 8525; Metazoa - 147; Fungi - 82; Plants - 1082; Viruses - 85; Other Eukaryotes - 3589 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G02560-MONOMERBioGrid:24668EC:3.4.21.92eggNOG:COG0740eggNOG:KOG0840EMBL:AB022326EMBL:AC022521
EMBL:AJ012278EMBL:AY084394EMBL:BT024859EMBL:CP002684EnsemblPlants:AT1G02560EnsemblPlants:AT1G02560.1entrez:839433
Gene3D:3.90.226.10GeneID:839433Genevisible:Q9S834GO:GO:0004252GO:GO:0009507GO:GO:0009532GO:GO:0009534
GO:GO:0009570GO:GO:0009579GO:GO:0009840GO:GO:0009941Gramene:AT1G02560.1HAMAP:MF_00444hmmpanther:PTHR10381
hmmpanther:PTHR10381:SF12HOGENOM:HOG000285833InParanoid:Q9S834IntAct:Q9S834InterPro:IPR001907InterPro:IPR018215InterPro:IPR023562
InterPro:IPR029045InterPro:IPR033135iPTMnet:Q9S834KEGG:ath:AT1G02560KO:K01358MEROPS:S14.A01OMA:ERFQSII
PANTHER:PTHR10381PaxDb:Q9S834PDB:1R92PDBsum:1R92Pfam:PF00574Pfam:Q9S834PhylomeDB:Q9S834
PIR:T52455PRIDE:Q9S834PRINTS:PR00127PRO:PR:Q9S834PROSITE:PS00381PROSITE:PS00382ProteinModelPortal:Q9S834
Proteomes:UP000006548RefSeq:NP_563657.1scanprosite:PS00381scanprosite:PS00382SMR:Q9S834STRING:3702.AT1G02560.1SUPFAM:SSF52096
TAIR:AT1G02560tair10-symbols:CLPP5tair10-symbols:NCLPP1tair10-symbols:NCLPP5UniGene:At.21093UniProt:Q9S834
Coordinates (TAIR10) chr1:+:538000..539805
Molecular Weight (calculated) 32357.70 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.20
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ
101: GQGPPPMVQE RFQSIISQLF QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR PDVSTVCVGL AASMGAFLLS
201: AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)