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AT1G01090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pyruvate dehydrogenase E1 alpha
Curator
Summary (TAIR10)
pyruvate dehydrogenase E1 alpha subunit
Computational
Description (TAIR10)
pyruvate dehydrogenase E1 alpha (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase complex E1 alpha subunit (TAIR:AT1G59900.1); Has 10065 Blast hits to 10059 proteins in 1888 species: Archae - 130; Bacteria - 6136; Metazoa - 517; Fungi - 241; Plants - 224; Viruses - 0; Other Eukaryotes - 2817 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G01090-MONOMERBioGrid:24664EC:1.2.4.1eggNOG:COG1071eggNOG:KOG0225EMBL:AC007323EMBL:AK226909
EMBL:AY052721EMBL:AY063724EMBL:CP002684EMBL:U80185EnsemblPlants:AT1G01090EnsemblPlants:AT1G01090.1entrez:839429
Gene3D:3.40.50.970GeneID:839429Genevisible:O24457GO:GO:0004739GO:GO:0006086GO:GO:0006096GO:GO:0009507
GO:GO:0009570GO:GO:0009941Gramene:AT1G01090.1gramene_pathway:1.2.1.-gramene_pathway:1.2.4.1gramene_pathway:PWYQT-4481gramene_pathway:PYRUVDEHYD-PWY
hmmpanther:PTHR11516hmmpanther:PTHR11516:SF25HOGENOM:HOG000281336InParanoid:O24457IntAct:O24457InterPro:IPR001017InterPro:IPR017597
InterPro:IPR029061KEGG:00010+1.2.4.1KEGG:00020+1.2.4.1KEGG:00620+1.2.4.1KEGG:ath:AT1G01090KO:K00161ncoils:Coil
OMA:RMFAEFFPaxDb:O24457Pfam:O24457Pfam:PF00676PhylomeDB:O24457PRIDE:O24457PRO:PR:O24457
ProMEX:O24457ProteinModelPortal:O24457Proteomes:UP000006548RefSeq:NP_171617.1SMR:O24457STRING:3702.AT1G01090.1SUPFAM:SSF52518
TAIR:AT1G01090tair10-symbols:PDH-E1 ALPHATIGRfam:TIGR03182TIGRFAMs:TIGR03182UniGene:At.20069UniProt:O24457
Coordinates (TAIR10) chr1:-:47705..49166
Molecular Weight (calculated) 47176.60 Da
IEP (calculated) 7.55
GRAVY (calculated) -0.27
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAFAPTKL TATVPLHGSH ENRLLLPIRL APPSSFLGST RSLSLRRLNH SNATRRSPVV SVQEVVKEKQ STNNTSLLIT KEEGLELYED MILGRSFEDM
101: CAQMYYRGKM FGFVHLYNGQ EAVSTGFIKL LTKSDSVVST YRDHVHALSK GVSARAVMSE LFGKVTGCCR GQGGSMHMFS KEHNMLGGFA FIGEGIPVAT
201: GAAFSSKYRR EVLKQDCDDV TVAFFGDGTC NNGQFFECLN MAALYKLPII FVVENNLWAI GMSHLRATSD PEIWKKGPAF GMPGVHVDGM DVLKVREVAK
301: EAVTRARRGE GPTLVECETY RFRGHSLADP DELRDAAEKA KYAARDPIAA LKKYLIENKL AKEAELKSIE KKIDELVEEA VEFADASPQP GRSQLLENVF
401: ADPKGFGIGP DGRYRCEDPK FTEGTAQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)