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AT1G01080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AF419554EMBL:AY086138EMBL:AY132012EMBL:CP002684EnsemblPlants:AT1G01080
EnsemblPlants:AT1G01080.1entrez:839463ExpressionAtlas:Q8W592Gene3D:3.30.70.330GeneID:839463GO:GO:0000166GO:GO:0003676
GO:GO:0019013GO:GO:0030529Gramene:AT1G01080.1hmmpanther:PTHR24012HOGENOM:HOG000130047InterPro:IPR000504InterPro:IPR012677
Pfam:PF00076Pfscan:PS50102PhylomeDB:Q8W592PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_171616.1SMART:SM00360
SMR:Q8W592STRING:3702.AT1G01080.2SUPFAM:SSF54928TAIR:AT1G01080UniGene:At.26684UniProt:Q8W592
Coordinates (TAIR10) chr1:-:45503..46789
Molecular Weight (calculated) 32577.50 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.46
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASCFAIPL SSSSRSSHNA IPKYKTLISS SSYSYLESLK LQFSSSNSFH HSSLSRPFVA QPLQIKVSSS ELSVLDEEKE EEVVKGEAEP NKDSVVSKAE
101: PVKKPRPCEL YVCNIPRSYD IAQLLDMFQP FGTVISVEVS RNPQTGESRG SGYVTMGSIN SAKIAIASLD GTEVGGREMR VRYSVDMNPG TRRNPEVLNS
201: TPKKILMYES QHKVYVGNLP WFTQPDGLRN HFSKFGTIVS TRVLHDRKTG RNRVFAFLSF TSGEERDAAL SFNGTQYEGR RIIVREGIEK SES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)