About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
ATCG00180.1
Subcellular Localization

min: :max

.
SUBAcon:
plastid 1.000
Predictors Annotations GFP MS/MS PPI GFP Images
AdaBoost : cytosol
ATP : no data
BaCelLo : plastid
ChloroP : no data
EpiLoc : plastid
iPSORT : mitochondrion
MitoPred : no data
Mitoprot 2 : no data
MultiLoc : mitochondrion
Nucleo : no data
PCLR : no data
Plant-mPloc : nucleus
Plant-mPloc : plastid
Predotar : no data
PredSL : endoplasmic reticulum
PredSL : extracellular
PredSL : golgi
PProwler : mitochondrion
PTS1 : no data
SLPFA : mitochondrion
SLP-Local : cytosol
SLP-Local : nucleus
SubLoc : cytosol
TargetP : mitochondrion
WoLF PSORT : cytosol
YLoc : cytosol
 AmiGO : plastid: 10574454
SwissProt : plastid
TAIR : plastid: 18431481
 no data nucleus : 23396599
plastid : 22616989
plastid : 20423899
plastid : 20061580
plastid : 18431481
plastid : 15028209
 AT4G09570.1 : 19130088
 no images
Description (TAIR10) protein_coding :DNA-directed RNA polymerase family protein
Curator
Summary (TAIR10)		 RNA polymerase beta' subunit-1
Computational
Description (TAIR10)		 RPOC1; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: RNA elongation; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1).
Coordinates (TAIR10) chrC:-:20251..23084
Molecular Weight (calculated) 78587.3 Da
IEP (calculated) 8.6
GRAVY (calculated) -0.29
Length 679 amino acids
Sequence (TAIR10)
(BLAST) 		MIDRYKHQ QLRIGLVS PQQISAWA TKIIPNGE IVGEVTKP YTFHYKTN KPEKDGLF CERIFGPI KSGICACG NYRVIGDE KEDPKFCE QCGVEFVD SRIRRYQM GYIKLTCP VTHVWYLK RLPSYIAN LLDKPLKE LEGLVYCD FSFARPIT KKPTFLRL RGSFEYEI QSWKYSIP LFFTTQGF DIFRNREI STGAGAIR EQLADLDL RIIIENSL VEWKQLGE EGPTGNEW EDRKIVRR KDFLVRRM ELAKHFIR TNIEPEWM VLCLLPVL PPELRPII QIEGGKLM SSDINELY RRVIYRNN TLTDLLTT SRSTPGEL VMCQEKLV QEAVDTLL DNGIRGQP MRDGHNKV YKSFSDVI EGKEGRFR ETLLGKRV DYSGRSVI VVGPSLSL HRCGLPRE IAIELFQT FVIRGLIR QHLASNIG VAKSQIRE KKPIVWEI LQEVMQGH PVLLNRAP TLHRLGIQ SFQPILVE GRTICLHP LVCKGFNA DFDGDQMA VHVPLSLE AQAEARLL MFSHMNLL SPAIGDPI SVPTQDML IGLYVLTS GTRRGICA NRYNPCNR KNYQNERI YETNYKYT KEPFFCNS YDAIGAYR QKKINLDS PLWLRWQL DQRVIASR EVPIEVHY ESFGNYHE IYAHYLIV RSVKKENF CIYIRTTV GHISFYRE IEEAIQGF SQACSYDT
Hydropathy Plot
(raw data) 		Hydropathy plot ATCG00180.1
See Also Aramemnon AtProteome DBGET Inparanoid MASCP Gator MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation
If you find this resource useful please cite one of the following publications:
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)
  Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res. 35(D):213-218. (PubMed)
  Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139(2):598-609. (PubMed)