About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
AT3G11940.1
Subcellular Localization

min: :max

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SUBAcon:
cytosol 1.000

Gold Standard: cytosol
Predictors Annotations GFP MS/MS PPI GFP Images
AdaBoost : cytosol
ATP : no data
BaCelLo : nucleus
ChloroP : no data
EpiLoc : cytosol
iPSORT : no data
MitoPred : no data
Mitoprot 2 : no data
MultiLoc : cytosol
Nucleo : no data
PCLR : no data
Plant-mPloc : plastid
Predotar : no data
PredSL : no data
PProwler : mitochondrion
PTS1 : no data
SLPFA : mitochondrion
SLP-Local : cytosol
SLP-Local : nucleus
SubLoc : mitochondrion
TargetP : no data
WoLF PSORT : cytoskeleton
YLoc : cytosol
 AmiGO : cytosol: 11598216
SwissProt: no localisation data
TAIR : plasma membrane: 17317660
TAIR : vacuole: 15539469
TAIR : plastid: 15028209
 no data cytosol : 22522809
cytosol : 15821981
nucleus : 23396599
plasma membrane : 22215637
plasma membrane : 21433285
plasma membrane : 17317660
plastid : 20061580
plastid : 15028209
 no images
Description (TAIR10) protein_coding :ribosomal protein 5A
Curator
Summary (TAIR10)		 One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.
Computational
Description (TAIR10)		 ribosomal protein 5A (RPS5A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5B (TAIR:AT2G37270.2); Has 8664 Blast hits to 8664 proteins in 3504 species: Archae - 243; Bacteria - 4586; Metazoa - 986; Fungi - 184; Plants - 1132; Viruses - 0; Other Eukaryotes - 1533 (source: NCBI BLink).
Coordinates (TAIR10) chr3:-:3778175..3779354
Molecular Weight (calculated) 22922.8 Da
IEP (calculated) 10.22
GRAVY (calculated) -0.14
Length 206 amino acids
Sequence (TAIR10)
(BLAST) 		MATAADVD AEIQQALT NEVKLFNR WTYDDVTV TDISLVDY IGVQAAKH ATFVPHTA GRYSVKRF RKAQCPIV ERLTNSLM MHGRNNGK KLMAVRIV KHAMEIIH LLSDLNPI QVIIDAIV NSGPREDA TRIGSAGV VRRQAVDI SPLRRVNQ AIFLITTG AREAAFRN IKTIAECL ADELINAA KGSSNSYA IKKKDEIE RVAKANR
Hydropathy Plot
(raw data) 		Hydropathy plot AT3G11940.1
See Also Aramemnon AtProteome DBGET Inparanoid MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation
If you find this resource useful please cite one of the following publications:
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)
  Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res. 35(D):213-218. (PubMed)
  Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139(2):598-609. (PubMed)