About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
AT5G64300.1
Subcellular Localization

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SUBAcon:
plastid 1.000
Predictors Annotations GFP MS/MS PPI GFP Images
AdaBoost : cytosol
ATP : no data
BaCelLo : plastid
ChloroP : no data
EpiLoc : cytosol
iPSORT : plastid
MitoPred : no data
Mitoprot 2 : mitochondrion
MultiLoc : plastid
Nucleo : no data
PCLR : plastid
Plant-mPloc : plastid
Predotar : plastid
PredSL : plastid
PProwler : plastid
PTS1 : no data
SLPFA : mitochondrion
SLP-Local : plastid
SubLoc : mitochondrion
TargetP : plastid
WoLF PSORT : plastid
YLoc : plastid
 AmiGO: no localisation data
SwissProt : plastid
TAIR : plastid: 18431481
 plastid : 23203051
 plastid : 21531424
plastid : 20061580
plastid : 18431481
 no images
Description (TAIR10) protein_coding :GTP cyclohydrolase II
Curator
Summary (TAIR10)		 encodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectively
Computational
Description (TAIR10)		 GTP cyclohydrolase II (GCH); FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: riboflavin biosynthesis protein, putative (TAIR:AT2G22450.1); Has 11690 Blast hits to 11688 proteins in 2324 species: Archae - 209; Bacteria - 6956; Metazoa - 1; Fungi - 397; Plants - 132; Viruses - 0; Other Eukaryotes - 3995 (source: NCBI BLink).
Coordinates (TAIR10) chr5:+:25718459..25720790
Molecular Weight (calculated) 59059.5 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.26
Length 542 amino acids
Sequence (TAIR10)
(BLAST) 		MSSINLSS SSPSTISL SRSRLSQS STTLLHGL HRVTLPSN HPLSTFSI KTNTGKVK AAVISRED DLLSFTNG NTPLSNGS LIDDRTEE PLEADSVS LGTLAADS APAPANGF VAEDDDFE LDLPTPGF SSIPEAIE DIRQGKLV VVVDDEDR ENEGDLVM AAQLATPE AMAFIVRH GTGIVCVS MKEDDLER LHLPLMVN QKENEEKL STAFTVTV DAKHGTTT GVSARDRA TTILSLAS RDSKPEDF NRPGHIFP LKYREGGV LKRAGHTE ASVDLTVL AGLDPVGV LCEIVDDD GSMARLPK LREFAAEN NLKVVSIA DLIRYRRK RDKLVERA SAARIPTM WGPFTAYC YRSILDGI EHIAMVKG EIGDGQDI LVRVHSEC LTGDIFGS ARCDCGNQ LALSMQQI EATGRGVL VYLRGHEG RGIGLGHK LRAYNLQD AGRDTVEA NEELGLPV DSREYGIG AQIIRDLG VRTMKLMT NNPAKYVG LKGYGLAI VGRVPLLS LITKENKR YLETKRTK MGHMYGLK FKGDVVEK IESESES
Hydropathy Plot
(raw data) 		Hydropathy plot AT5G64300.1
See Also Aramemnon AtProteome DBGET Inparanoid MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation
If you find this resource useful please cite one of the following publications:
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)
  Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res. 35(D):213-218. (PubMed)
  Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139(2):598-609. (PubMed)