About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
AT5G48300.1
Subcellular Localization

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SUBAcon:
plastid 1.000
Predictors Annotations GFP MS/MS PPI GFP Images
AdaBoost : plastid
ATP : no data
BaCelLo : plastid
ChloroP : no data
EpiLoc : plastid
iPSORT : plastid
MitoPred : no data
Mitoprot 2 : no data
MultiLoc : plastid
Nucleo : no data
PCLR : plastid
Plant-mPloc : plastid
Predotar : plastid
PredSL : plastid
PProwler : plastid
PTS1 : no data
SLPFA : plastid
SLP-Local : plastid
SubLoc : cytosol
TargetP : plastid
WoLF PSORT : plastid
YLoc : plastid
 AmiGO: no localisation data
SwissProt : plastid
TAIR : plastid: 18633119
TAIR : plastid: 18431481
 plastid : in house
 plastid : 21539947
plastid : 21531424
plastid : 20423899
plastid : 20061580
plastid : 18633119
plastid : 18433418
plastid : 18431481
plastid : 16207701
 AT2G21590.1 : 21798944
AT3G09250.1 : 21798944

Arabidopsis cell culture (plastidal marker)

At5g48300-GFP
(full-length)		plastidal marker-RFPoverlay

Images by Sandra Tanz
last updated: Tue Feb 7 12:48:57 2012 v0.0.17
Description (TAIR10) protein_coding :ADP glucose pyrophosphorylase 1
Curator
Summary (TAIR10)		 Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
Computational
Description (TAIR10)		 ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Coordinates (TAIR10) chr5:+:19570326..19572557
Molecular Weight (calculated) 56653.7 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.13
Length 519 amino acids
Sequence (TAIR10)
(BLAST) 		MASVSAIG VLKVPPAS TSNSTGKA TEAVPTRT LSFSSSVT SSDDKISL KSTVSRLC KSVVRRNP IIVSPKAV SDSQNSQT CLDPDASS SVLGIILG GGAGTRLY PLTKKRAK PAVPLGAN YRLIDIPV SNCLNSNI SKIYVLTQ FNSASLNR HLSRAYAS NMGGYKNE GFVEVLAA QQSPENPN WFQGTADA VRQYLWLF EEHNVLEY LILAGDHL YRMDYEKF IQAHRETD ADITVAAL PMDEQRAT AFGLMKID EEGRIIEF AEKPKGEH LKAMKVDT TILGLDDQ RAKEMPFI ASMGIYVV SRDVMLDL LRNQFPGA NDFGSEVI PGATSLGL RVQAYLYD GYWEDIGT IEAFYNAN LGITKKPV PDFSFYDR SAPIYTQP RYLPPSKM LDADVTDS VIGEGCVI KNCKIHHS VVGLRSCI SEGAIIED SLLMGADY YETATEKS LLSAKGSV PIGIGKNS HIKRAIID KNARIGDN VKIINSDN VQEAARET DGYFIKSG IVTVIKDA LIPTGTVI
Hydropathy Plot
(raw data) 		Hydropathy plot AT5G48300.1
See Also Aramemnon AtProteome DBGET Inparanoid MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation
If you find this resource useful please cite one of the following publications:
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)
  Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res. 35(D):213-218. (PubMed)
  Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139(2):598-609. (PubMed)