About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
AT2G30950.1
Subcellular Localization

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SUBAcon:
plastid 1.000

Gold Standard: plastid
Predictors Annotations GFP MS/MS PPI GFP Images
AdaBoost : cytosol
ATP : mitochondrion
ATP : plastid
BaCelLo : plastid
ChloroP : plastid
EpiLoc : plastid
iPSORT : plastid
MitoPred : no data
Mitoprot 2 : mitochondrion
MultiLoc : plastid
Nucleo : no data
PCLR : plastid
Plant-mPloc : plastid
Predotar : plastid
PredSL : no data
PProwler : plastid
PTS1 : no data
SLPFA : mitochondrion
SLP-Local : plastid
SubLoc : cytosol
TargetP : plastid
WoLF PSORT : plastid
YLoc : cytosol
 AmiGO : plastid: 10849347
AmiGO : plastid: 11134419
AmiGO : plastid: 14630971
AmiGO : plastid: 8910594
SwissProt : plastid
TAIR : plastid: 15322131
TAIR : plastid: 10849347
TAIR : plastid: 18431481
TAIR : plastid: 12938931
TAIR : plastid: 11134419
 no data plasma membrane : 21433285
plasma membrane : 19334764
plastid : 21531424
plastid : 20061580
plastid : 19676087
plastid : 18633119
plastid : 18431481
plastid : 16648217
plastid : 15322131
plastid : 15028209
plastid : 14729914
plastid : 12938931
plastid : 11719511
 AT1G22920.1 : 21798944
AT2G25000.1 : 21798944
 no images
Description (TAIR10) protein_coding :FtsH extracellular protease family
Curator
Summary (TAIR10)		 Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.
Computational
Description (TAIR10)		 VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink).
Coordinates (TAIR10) chr2:+:13174692..13177064
Molecular Weight (calculated) 74161.8 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.14
Length 694 amino acids
Sequence (TAIR10)
(BLAST) 		MAASSACL VGNGLSVN TTTKQRLS KHFSGRQT SFSSVIRT SKVNVVKA SLDGKKKQ EGRRDFLK ILLGNAGV GLVASGKA NADEQGVS SSRMSYSR FLEYLDKD RVNKVDLY ENGTIAIV EAVSPELG NRVERVRV QLPGLSQE LLQKLRAK NIDFAAHN AQEDQGSV LFNLIGNL AFPALLIG GLFLLSRR SGGGMGGP GGPGNPLQ FGQSKAKF QMEPNTGV TFDDVAGV DEAKQDFM EVVEFLKK PERFTAVG AKIPKGVL LIGPPGTG KTLLAKAI AGEAGVPF FSISGSEF VEMFVGVG ASRVRDLF KKAKENAP CIVFVDEI DAVGRQRG TGIGGGND EREQTLNQ LLTEMDGF EGNTGVIV VAATNRAD ILDSALLR PGRFDRQV SVDVPDVK GRTDILKV HAGNKKFD NDVSLEII AMRTPGFS GADLANLL NEAAILAG RRARTSIS SKEIDDSI DRIVAGME GTVMTDGK SKSLVAYH EVGHAVCG TLTPGHDA VQKVTLIP RGQARGLT WFIPSDDP TLISKQQL FARIVGGL GGRAAEEI IFGDSEVT TGAVGDLQ QITGLARQ MVTTFGMS DIGPWSLM DSSAQSDV IMRMMARN SMSEKLAE DIDSAVKK LSDSAYEI ALSHIKNN REAMDKLV EVLLEKET IGGDEFRA ILSEFTEI PPENRVPS STTTTPAS APTPAAV
Hydropathy Plot
(raw data) 		Hydropathy plot AT2G30950.1
See Also Aramemnon AtProteome DBGET Inparanoid MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation
If you find this resource useful please cite one of the following publications:
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)
  Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res. 35(D):213-218. (PubMed)
  Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139(2):598-609. (PubMed)