About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
AT2G15620.1
Subcellular Localization

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SUBAcon:
plastid 1.000
Predictors Annotations GFP MS/MS PPI GFP Images
AdaBoost : cytosol
ATP : no data
BaCelLo : plastid
ChloroP : plastid
EpiLoc : plastid
iPSORT : plastid
MitoPred : no data
Mitoprot 2 : no data
MultiLoc : plastid
Nucleo : no data
PCLR : plastid
Plant-mPloc : mitochondrion
Plant-mPloc : plastid
Predotar : plastid
PredSL : plastid
PProwler : plastid
PTS1 : no data
SLPFA : plastid
SLP-Local : plastid
SubLoc : cytosol
TargetP : plastid
WoLF PSORT : plastid
YLoc : plastid
 AmiGO : mitochondrion: 14671022
SwissProt : plastid
TAIR : mitochondrion: 14671022
TAIR : plastid: 18431481
TAIR : plastid: 16207701
 no data mitochondrion : 14671022
plasma membrane : 21433285
plastid : 21539947
plastid : 21531424
plastid : 20423899
plastid : 20061580
plastid : 18633119
plastid : 18433418
plastid : 18431481
plastid : 16207701
plastid : 15028209
 AT5G42980.1 : 15352244
AT1G63940.1 : 21798944
 no images
Description (TAIR10) protein_coding :nitrite reductase 1
Curator
Summary (TAIR10)		 Involved in the second step of nitrate assimilation. Its expression is induced by nitrate.
Computational
Description (TAIR10)		 nitrite reductase 1 (NIR1); FUNCTIONS IN: ferredoxin-nitrate reductase activity, nitrite reductase (NO-forming) activity; INVOLVED IN: response to salt stress, response to nitrate; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nitrite/sulphite reductase iron-sulphur/siroheam-binding site (InterPro:IPR006066), Nitrite/sulphite reductase 4Fe-4S domain (InterPro:IPR006067), Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like (InterPro:IPR005117); BEST Arabidopsis thaliana protein match is: sulfite reductase (TAIR:AT5G04590.1); Has 5959 Blast hits to 5874 proteins in 1733 species: Archae - 294; Bacteria - 4692; Metazoa - 2; Fungi - 157; Plants - 240; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).
Coordinates (TAIR10) chr2:+:6810552..6812666
Molecular Weight (calculated) 65508.7 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.4
Length 585 amino acids
Sequence (TAIR10)
(BLAST) 		MTSFSLTF TSPLLPSS STKPKRSV LVAAAQTT APAESTAS VDADRLEP RVELKDGF FILKEKFR KGINPQEK VKIEREPM KLFMENGI EELAKKSM EELDSEKS SKDDIDVR LKWLGLFH RRKHQYGK FMMRLKLP NGVTTSAQ TRYLASVI RKYGEDGC ADVTTRQN WQIRGVVL PDVPEILK GLASVGLT SLQSGMDN VRNPVGNP IAGIDPEE IVDTRPYT NLLSQFIT ANSQGNPD FTNLPRKW NVCVVGTH DLYEHPHI NDLAYMPA NKDGRFGF NLLVGGFF SPKRCEEA IPLDAWVP ADDVLPLC KAVLEAYR DLGTRGNR QKTRMMWL IDELGVEG FRTEVEKR MPNGKLER GSSEDLVN KQWERRDY FGVNPQKQ EGLSFVGL HVPVGRLQ ADDMDELA RLADTYGS GELRLTVE QNIIIPNV ETSKTEAL LQEPFLKN RFSPEPSI LMKGLVAC TGSQFCGQ AIIETKLR ALKVTEEV ERLVSVPR PIRMHWTG CPNTCGQV QVADIGFM GCLTRGEE GKPVEGAD VYVGGRIG SDSHIGEI YKKGVRVT ELVPLVAE ILIKEFGA VPREREEN ED
Hydropathy Plot
(raw data) 		Hydropathy plot AT2G15620.1
See Also Aramemnon AtProteome DBGET Inparanoid MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation
If you find this resource useful please cite one of the following publications:
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)
  Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res. 35(D):213-218. (PubMed)
  Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139(2):598-609. (PubMed)