About SUBA3
The SubCellular Proteomic Database (SUBA3) houses large scale proteomic and GFP localisation sets from cellular compartments of Arabidopsis. It also contains precompiled bioinformatic predictions for protein subcellular localisations. A new dataset of protein-protein interactions has recently been added.
AT1G01010.1
Subcellular Localization

min: :max

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SUBAcon:
nucleus 1.000

Gold Standard: nucleus
Predictors Annotations GFP MS/MS PPI GFP Images
AdaBoost : cytosol
ATP : no data
BaCelLo : nucleus
ChloroP : no data
EpiLoc : no data
iPSORT : no data
MitoPred : no data
Mitoprot 2 : no data
MultiLoc : nucleus
Nucleo : no data
PCLR : no data
Plant-mPloc : nucleus
Predotar : no data
PredSL : mitochondrion
PProwler : mitochondrion
PTS1 : no data
SLPFA : endoplasmic reticulum
SLPFA : extracellular
SLPFA : golgi
SLP-Local : cytosol
SLP-Local : nucleus
SubLoc : nucleus
TargetP : no data
WoLF PSORT : nucleus
YLoc : cytosol
 AmiGO: no localisation data
SwissProt: no localisation data
TAIR: no localisation data
 no data no data AT1G10030.1 : 21798944
AT1G12390.1 : 21798944
AT1G14360.1 : 21798944
AT1G16240.1 : 21798944
AT1G17080.1 : 21798944
AT1G21790.1 : 21798944
AT1G62880.1 : 21798944
AT1G75630.1 : 21798944
AT1G76670.1 : 21798944
AT1G77350.1 : 21798944
AT2G02990.1 : 21798944
AT2G20740.1 : 21798944
AT2G31490.1 : 21798944
AT2G32380.1 : 21798944
AT2G33120.1 : 21798944
AT2G43510.1 : 21798944
AT2G44080.1 : 21798944
AT3G07950.1 : 21798944
AT3G10260.1 : 21798944
AT3G25190.1 : 21798944
AT3G28080.1 : 21798944
AT3G29034.1 : 21798944
AT3G43520.1 : 21798944
AT3G57090.1 : 21798944
AT4G14730.1 : 21798944
AT4G28040.1 : 21798944
AT5G05760.1 : 21798944
AT5G19875.1 : 21798944
AT5G43460.1 : 21798944
AT5G51010.1 : 21798944
 no images
Description (TAIR10) protein_coding :NAC domain containing protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 NAC domain containing protein 1 (NAC001); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 69 (TAIR:AT4G01550.1); Has 2503 Blast hits to 2496 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2502; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Coordinates (TAIR10) chr1:+:3760..5630
Molecular Weight (calculated) 49428.4 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.73
Length 428 amino acids
Sequence (TAIR10)
(BLAST) 		MEDQVGFG FRPNDEEL VGHYLRNK IEGNTSRD VEVAISEV NICSYDPW NLRFQSKY KSRDAMWY FFSRRENN KGNRQSRT TVSGKWKL TGESVEVK DQWGFCSE GFRGKIGH KRVLVFLD GRYPDKTK SDWVIHEF HYDLLPEH QRTYVICR LEYKGDDA DILSAYAI DPTPAFVP NMTSSAGS VVNQSRQR NSGSYNTY SEYDSANH GQQFNENS NIMQQQPL QGSFNPLL EYDFANHG GQWLSDYI DLQQQVPY LAPYENES EMIWKHVI EENFEFLV DERTSMQQ HYSDHRPK KPVSGVLP DDSSDTET GSMIFEDT SSSTDSVG SSDEPGHT RIDDIPSL NIIEPLHN YKAQEQPK QQSKEKVI SSQKSECE WKMAEDSI KIPPSTNT VKQSWIVL ENAQWNYL KNMIIGVL LFISVISW IILVG
Hydropathy Plot
(raw data) 		Hydropathy plot AT1G01010.1
See Also Aramemnon AtProteome DBGET Inparanoid MIPS MPSS Plus PPDB PlantSpecDB ProMEX Proteins Wiki SALK (inserts) SALK (signal) TAIR SwissProt

Citation
If you find this resource useful please cite one of the following publications:
Tanz SK, Castleden I, Hooper CM, Vacher M, Small I; Millar, AH (2013) SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis. Nucleic Acids Res. 41: D1185-91 (Nucleic Acids Res.) (PubMed)
  Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I and Millar AH. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res. 35(D):213-218. (PubMed)
  Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. (2005) Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol. 139(2):598-609. (PubMed)